PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034275.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 255aa    MW: 28701.7 Da    PI: 7.943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034275.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-182877255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  HL.SW.v1.0.G034275.1 28 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 77
                          799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5852885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-282885IPR001471AP2/ERF domain
SMARTSM003808.3E-362891IPR001471AP2/ERF domain
PfamPF008474.7E-132877IPR001471AP2/ERF domain
CDDcd000182.13E-322884No hitNo description
SuperFamilySSF541712.88E-192885IPR016177DNA-binding domain
PRINTSPR003678.2E-82940IPR001471AP2/ERF domain
PRINTSPR003678.2E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEIQFQNSMI TKKKGRNKRN NKSSNKNKFV GVRQRPSGRW VAEIKDTTQK IRMWLGTFET  60
AEEAARAYDE AACLLRGSNT RTNFITHVSM DSPLASRIKN LLNNNNKKEK YLIMITMIDQ  120
NNKTLALALV IILVLVLAPQ QLLPVDAYKP DLSSFGFSQP SNNNNNLTST WGGGFDRFSF  180
GITGDGQLDL CKNSIENNVD DDGSEFLEFE RMKVERQISA SLYAMNGVQE YMEALHHDPV  240
DALWDLPPLC SLLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899372.12e-89PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLD7TI776e-86D7TI77_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g07250.t012e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-37related to AP2 11